Q1. Which part of the plant is best suited for making virus-free plants and why?
Answer: The meristem is the plant part that is best suited for making virus-free plants. This is because even when the plant is infected: with a virus, the meristem (apical and axillary) remains infection free; it can be removed. grown in vitro to obtain virus-free plants.
Q2. What is the major advantage of producing plants by micropropagation?
Answer: Micropropagation is a method of producing new plants in a short duration using plant tissue culture. Some major advantages of micropropagation are as follows:
(a) Micropropagation helps in the propagation of a large number of plants in a short span of time.
(b) The plants produced are identical to the mother plant.
(c) It leads to the production of healthier plantlets, which exhibit better disease-resisting powers.
Q3. Find out what the various components of the medium used for propagation of an explant in vitro are?
Answer: The major components of medium used for propagation of explants in vitro are carbon sources such as sucrose, inorganic salts, vitamins, amino acids, water, agar-agar, and certain growth hormones such as auxins and gibberellins.
Q4. Crystals of Bt toxin produced by some bacteria do not kill the bacteria themselves because:
(a) bacteria are resistant to the toxin
(b) toxin is immature
(c) toxin is inactive
(d) bacteria encloses toxin in a special sac
Answer: (c) Toxin is inactive. The Bt toxin remains inactive in the bacteria. It gets activated after entering the insect gut due to the alkaline pH.
Q5. What are transgenic bacteria ? Illustrate using any one example.
Answer: Transgenic bacteria are the bacteria whose genes have been manipulated by transferring foreign genes into its genome through recombinant DNA technology. For example, transgenic E.coli was developed by introducing in it, two DNA sequences of \(A\) and \(B\) chains of human insulin in order to produce insulin to treat diabetic patients.
Q6. Compare and contrast the advantages and disadvantages of production of genetically modified crops.
Answer: GM crops are genetically modified crops that can be made by transferring desirable characteristics in them. The main advantage of GM crops is that they are highly productive and they yield an increased amount of produce. The other advantages of the production of genetically modified crops in order to increase the yield are as follows:
1. GM crops can be developed for increasing the nutritional quality of crop products. For example golden rice with enhanced vitamin A content is a GM crop.
2. Many GM crops are developed to have insect pest resistance, thus decreasing our dependence on chemical-based insecticides/pesticides.
3. GM crops are made to be highly tolerant of environmental conditions.
4. GM crops are highly tolerant to abiotic conditions
5. GM Crops minimize post- harvesting losses.
Q7. What are Cry proteins? Name an organism that produces it. How has man exploited this protein to his benefit?
Answer: Cry proteins are toxin proteins encoded by cry genes. These are produced by a bacteria called Bacillus thuringiensis which itself remains safe from cry toxins by having methylated DNA. Cry proteins act as insecticides as they are toxic to insects. This property of Cry proteins has been exploited in producing genetically modified crops such as Bt cotton, Bt brinjal etc. These crops are resistant to insects of order Lepidoptera. GM crops possess some disadvantages also. The presence of a transgene in commercial crops endangered wild species. The gene for Bt toxin expressed in pollen endangers pollinators such as honeybees. These crops supply allergens and transfer antibiotic resistance markers. They are damaging to the genetic environment.
Q8. What is gene therapy? Illustrate using the example of adenosine deaminase (ADA) deficiency.
Answer: Gene therapy refers to a collection of methods and technologies allowing correction or replacement of a defective or dysfunctional gene. While correcting, a normal gene is transferred into the individual’s embryo to replace and perform the function of the original defective gene. One well-established example of gene therapy is ADA deficiency. This is caused by the deletion of a gene encoding for enzyme adenosine deaminase. The gene therapy for ADA deficiency was carried out in a 4 -year-old patient by the following method:
1. The lymphocytes of patients were grown in a culture in vitro.
2. A functional ADA cDNA was introduced in these lymphocytes using a retroviral vector.
3. The transformed lymphocytes were introduced back into the blood of the patient.
4. The patient is regularly infused with transformed lymphocytes
5. For a permanent cure of ADA deficiency, a gene isolated from bone marrow cells is introduced in the patient in the early stage
Q9. Diagrammatically represent the experimental steps in cloning and expressing a human gene (say the gene for growth hormone) into a bacterium like E. coli?
Answer: Diagrammatic representation of steps in DNA cloning
Q10. Can you suggest a method to remove oil (hydrocarbon) from seeds based on your understanding of rDNA technology and chemistry of oil?
Answer: Recombinant DNA technology is a technique by which the genome of an organism can be manipulated Oils are made of glycerols and fatty acids. So using recombinant DNA technology we can silence the genes coding for glycerol and fatty acids and remove oil (hydrocarbon) from seeds.
Q11. Find out from the internet what golden rice.
Answer: Golden rice is a variety of rice crop, genetically engineered to synthesise beta carotene which is a precursor of vitamin A. The normal rice produces be a carotene but in leaves, to increase the production of vitamin A , beta carotene should be synthesised in the endosperm. Golden rice was developed by transferring two beta-carotene biosynthesis genes into the rice genome. These genes include psy (phytoene synthase) from a plant named Narcissus pseudonarcissus (daffodil) and \(\)c r t\(\) (phytoene desaturase) from the soil bacterium Erwinia uredovora. These genes were under endosperm-specific promoter so that they will show expression in the endosperm.
Q12. Does our blood have proteases and nucleases?
Answer: Proteases and nucleases are two enzymes that catalyse the hydrolysis of proteins and nucleic acids respectively. These enzymes are not found in blood, instead, blood contains protease inhibitors protecting the proteins being broken down. Similarly, nucleases are also absent in blood.
Q13. Consult the internet and find out how to make orally active protein pharmaceutical. What is the major problem to be encountered?
Answer: Orally active protein pharmaceuticals contain Biologically Active Proteins, lipids etc. These are taken into the body by oral route in various formulations. The production of these protein pharmaceuticals involve encapsulation of proteins or peptides in liposomes using penetration enhancers. These proteins or peptides are used for the treatment of diseases and they can also be used as vaccines. The major problem encountered in the administration of the pharmaceuticals is that they are ingested orally, and digested by the proteases present in the stomach before showing results. This is why such pharmaceuticals are directly ingested into the target site.
Exemplar Section
VERY SHORT ANSWER TYPE QUESTIONS
Q1. In view of the current food crisis, it is said, that we need another green revolution. Highlight the major limitations of the earlier green revolution.
Answer: Limitations of green revolution:
Q2. Expand GMO. How is it different from a hybrid?
Answer: GMO stands for Genetically Modified Organism. It differs from a hybrid because in a hybrid, cross is done between total genomes of two species or strains, where as in a GMO, foreign gene(s) is introduced in the organism and is usually maintained as extra-chromosomal entity or is integrated into the genome of the organism.
Q3. Differentiate between diagnostics and therapeutics. Give one example and for each category.
Answer: A diagnostic technique helps us to identify a disease. Example: ELISA is a test for HIV. A therapeutic agent on the other hand helps in the treatment of a disease. Example: Antibiotics for bacterial infections.
Q4. Give the full form of ELISA. Which disease can be detected using it? Discuss the principle underlying the test.
Answer: Enzyme Linked Immuno-sorbent Assay (ELISA) is used for the detection of AIDS. ELISA is based on the principle of antigen-antibody interaction. Infection by pathogen can be detected by the presence of antigens (proteins, glycoproteins, etc.) or by detecting the antibodies synthesised against the pathogen.
Q5. Can a disease be detected before its symptoms appear? Explain the principle involved.
Answer: Presence of a pathogen (bacteria, viruses, etc.) is normally suspected only when the pathogen has produced a disease symptom. By this time the concentration of pathogen is already very high in the body. However, very low concentration of a bacteria or virus (at a time when the symptoms of the disease are not yet visible) can be detected by amplification of their nucleic acid by PCR.
Q6. Write a short note on Biopiracy highlighting the exploitation of developing countries by the developed countries.
Answer: Biopiracy is the term used to refer to the use of bio-resources by multinational companies and other organisations without proper authorisation from the countries and people concerned without compensatory payment. Most of the industrialised nations are rich financially but poor in biodiversity arid traditional knowledge. In contrast the developing and the underdeveloped world is rich in biodiversity and traditional knowledge related to bio-resources. Traditional knowledge related to bio-resources can be exploited to develop modem applications and can also be used to save time, effort and expenditure during their commercialisation.
Q7. Many proteins are secreted in their inactive form. This is also true of many toxic proteins produced by micro organisms. Explain how the mechanism is useful for the organism producing the toxin?
Answer: Many proteins including certain toxins are secreted in their inactive form. They get activated, only when exposed to a specific trigger (pH. temperature etc.). It is advantageous to the bacteria producing it because the bacteria does not get killed due to the action of protein.
Q8. While creating genetically modified organisms, genetic barriers are not respected. How can this be dangerous in the long run?
Answer: The manipulation of living organisms by the human race cannot go on any further, without regulation. Some ethical standards are required to evaluate the morality of all human activities that might help or harm living organisms. Going beyond the morality of such issues, the biological significance of such things is also important. Genetic modification of organisms can have unpredictable results when such organisms are introduced into the ecosystem.
Q9. Why has the Indian Parliament cleared the second amendment of the country’s patents bill?
Answer: The Indian Parliament has recently cleared the second amendment of the Indian Patents Bill, that take such issues into consideration, including patent terms emergency provisions and research and development initiative.
Q10. Give any two reasons why the patent on Basmati should not have gone to an American Company.
Answer: (i) Rice is an important food grain, the presence of which goes back ‘ thousands of years in Asia’s agricultural history. There is an estimated 200,000 varieties of rice in India alone. The diversity of rice in India is one of the richest in the world. Basmati rice is distinct for its unique aroma and flavour and 27 documented varieties of Basmati are grown in India.
(ii) There is a reference to Basmati in ancient texts, folklore and poetry.
Q11. How was Insulin obtained before the advent of rDNA technology? What were the problems encountered?
Answer: Insulin used for diabetes was earlier extracted from pancreas of slaughtered cattle and pigs. Insulin from an animal source, though caused some patients to develop allergy or other types of reactions to the foreign protein.
Q12. With respect to understanding diseases, discuss the importance of transgenic animal models.
Answer: Many transgenic animals are designed to increase our understanding of how genes contribute to the development of disease. These are specially made to serve as models for human diseases so that investigation of new treatments for diseases is made possible. Today transgenic models exist for many human diseases such as cancer, cystic fibrosis, rheumatoid arthritis and Alzheimer’s.
Q13. Name the first transgenic cow. Which gene was introduced in this cow?
Answer: Rosie was the name of the first transgenic cow. Gene for human alpha lactalbumin was introduced in its gene, which made the milk nutritionally richer.
Q14. PCR is a useful tool for early diagnosis of an infectious disease. Elaborate.
Answer: PCR is a very sensitive technique which enables the specific amplification of desired DNA from a limited amount of DNA template. Hence, it can detect the presence of an infectious organism in the infected patient at an early stage of infection (even before the infectious organism has multiplied to large number).
Q15. What is GEAC and what are its objectives?
Answer: GEAC (Genetic Energy Approval Committee) is an Indian government organisation. Its objective are to:
(a) examine the validity of GM (Genetic modification of organism) research.
(b) inspect the safety of introducing GM for public services.
Q16. For which variety of Indian rice, the patent was filed by a USA Company?
Answer: Indian Basmati was crossed with semi-dwarf variety and was claimed as a new variety for which the patent was filed by a USA company.
Q17. Discuss the advantages of GMO.
Answer: Plants, bacteria, fungi and animals whose genes have been altered by manipulation are called Genetically Modified Organisms (GMO). GM plants have been useful in many ways. Genetic modification has:
SHORT ANSWER TYPE QUESTIONS
Q1. Gene expression can be controlled with the help of RNA. Explain the method with an example.
Answer: Gene expression can be controlled by using RNA molecule. The technology is called RNA interference or RNAi. It is used to block the expression of certain genes and also referred to as gene silencing. During this process a complementary RNA to the mRN A being produced by the gene is introduced into the cell. This RNA binds to the mRNA making it double stranded and therefore stops translation. Resistance to nematode Meloidegyne incognita in tomato has been achieved by this method.
Q2. Ignoring our traditional knowledge can we prove costly in the area of biological patenting. Justify.
Answer: Most of the industrialised nations are rich financially but poor in biodiversity and traditional knowledge. In contrast the developing and the underdeveloped world is rich in biodiversity and traditional knowledge related to bio-resources. Traditional knowledge related to bio-resources can be exploited to develop modem applications and can also be used to save time, effort and expenditure during their commercialisation. There has been” growing realisation of the injustice, inadequate compensation and benefit sharing between developed and developing countries. Therefore, some nations are developing laws to prevent such unauthorised exploitation of their bio-resources and traditional knowledge.
Q3. Highlight any four areas where genetic modification of plants has been useful.
Answer: Plants, bacteria, fungi and animals whose genes have been altered by manipulation are called Genetically Modified Organisms (GMO). GM plants have been useful in many ways. Genetic modification has
(i) Made crops more tolerant to abiotic stresses (cold, drought, salt, heat).
(ii) Reduced reliance on chemical pesticides (pest-resistant crops).
(iii) Helped to reduce post-harvest losses.
(iv) Increased efficiency of mineral usage by plants (this prevents early exhaustion of fertility of soil).
Q4. What is a recombinant DNA vaccine? Give two examples.
Answer: A recombinant vaccine is a vaccine produced through recombinant DNA technology. This involves inserting the DNA encoding an antigen that stimulates an immune response into bacterial or mammalian cells. Recombinant DNA technology has allowed the production of antigenic polypeptides of pathogen in bacteria or yeast. Vaccines produced using this .approach allow large scale production and hence greater availability for immunisation, e.g., hepatitis B vaccine (Recombivax HB) produced from yeast. As of June 2015 one human DNA vaccine had been approved for human use, the single-dose Japanese encephalitis vaccine called IMOJEV, released in 2010 in Australia.
Q5. Why is it that the line of treatment for a genetic disease is different from infectious diseases?
Answer: If a person is born with a hereditary disease, can a corrective therapy be taken for such a disease? Gene therapy is an attempt to do this. Gene therapy is a collection of methods that allows correction of a gene defect that has been diagnosed in a child/embryo.
Q6. Discuss briefly how a probe is used in molecular diagnostics.
Answer: A single stranded DNA or RNA, tagged with a radioactive molecule (probe) is allowed to hybridise to its complementary DNA in a clone of cells followed by detection using autoradiography. The clone having the mutated gene will hence not appear on the photographic film, because the probe will not have complementarity with the mutated gene.
Q7. Who was the first patient who was given gene therapy? Why was the given treatment recurrent in nature?
Answer: The first clinical gene therapy was given in 1990 to a 4-year old girl with adenosine deaminase (ADA) deficiency. This enzyme is crucial for the immune system to function. The disorder is caused due to the deletion of the gene for adenosine deaminase. In some children ADA deficiency can be cured by bone marrow transplantation; in others it can be treated by – enzyme replacement therapy, in which functional ADA is given to the patient by injection. But the problem- with both of these approaches that they are not completely curative. As a first step towards gene therapy, lymphocytes from the blood of the patient are grown in a culture outside the body. A functional ADA cDNA (using a retroviral vector) is then introduced into these lymphocytes, which are subsequently returned to the patient. However, as these cells are not immortal, the patient requires “periodic infusion of such genetically engineered lymphocytes. However, if the gene isolate from marrow cells producing ADA is introduced into cells at early embryonic stages, it could be a permanent cure.
Q8. Taking examples under each category, discuss upstream and downstream processing.
Answer: Upstream processing: Biotechnological processes can be separated into upstream processes and downstream processes. The upstream process is defined as the entire process from DNA isolation and culture expansion of the cells until final product. Downstream processing: After completion of the biosynthetic stage, the product has to be subjected through a series of processes before it Is ready for marketing as a finished product. The processes include separation and purification, which are collectively referred to as downstream processing. The product has to be formulated with suitable preservatives. Such formulation has to undergo through clinical trials as in case of drugs. Strict quality control testing for each product is also required. The downstream processing and quality control testing vary from product to product.
Q9. Define Antigen and Antibody. Name any two diagnostic kits based upon them.
Answer: An antigen is a foreign substance that elicits the formation of an antibody. Antibody is a protein that is synthesised in response to an antigen. Antigen and antibody show high degree of specificity in binding each other. Two diagnostic kits based on antigen-antibody interaction are:
(a) ELISA for HIV.
(b) Pregnancy test kits.
Q10. ELISA technique is based on the principles of antigen-antibody interaction. Can this technique be used in the molecular diagnosis of a genetic disorder, such as phenylketonuria?
Answer: Yes. One can use antibody against the enzyme (that is responsible for the metabolism of phenylalanine) to develop ELISA based diagnostic technique. The patient where the enzyme protein is absent would give negative result in ELISA when compared to normal individual.
Q11. How is a mature, functional insulin hormone different from its prohormone form?
Answer: Mature functional insulin is obtained by processing of pro-hormone which contains extra peptide called C-peptide. This C-peptide is removed during maturation of pro-insulin to insulin.
Q12. Gene therapy is an attempt to correct a genetic defect by providing a normal gene into the individual. By this the normal function can be restored. An alternate method would be to provide the gene product (protein/enzyme) known as enzyme replacement therapy, which would also restore the function. Which in your opinion is a better option? Give reason for your answer.
Answer: Though both Gene therapy and Enzyme replacement therapy helps to restore genetic defects, Gene therapy is much better than Enzyme replacement therapy. Because, in Gene therapy, once the defective gene is repaired using a normal gene, the affected individual gains complete recovery whereas, in Enzyme replacement therapy, the respective enzyme or protein has to be provided periodically and does not offer a permanent cure. Moreover, when compared to Gene therapy, Enzyme replacement therapy is highly expensive.
Q13. Transgenic animals are the animals in which a foreign gene is expressed. Such animals can be used to study the fundamental biological process, phenomenon as well as for producing products useful for mankind. Give one example for each type.
Answer: Study of basic biological process – how genes are regulated, how they affect the normal functions of the body and its development. Transgenic cow, Rosie is an example for the second category.
Q14. When a foreign DNA is introduced into an organism, how is it maintained in the host and how is it transferred to the progeny of the organism?
Answer: Foreign gene is usually ligated to a plasmid vector and introduced in the host. As plasmid replicates, and makes multiple copies of itself, so does the foreign gene gets replicated and its copes are made. When the host organism divides, its progeny also receives the plasmid DNA containing the foreign gene.
Q15. Bt cotton is resistant to pest, such as lepidopteron, dipterans and coleopterans. Is Bt cotton also resistant to other pests as well?
Answer: Bt cotton is made resistant to only certain specific taxa of pests. It is quite likely that in future, some other pests may infest this Bt cotton plants. It has similar immunisation against small-pox which does not provide immunity against other pathogens like those that cause cholera, typhoid etc.
LONG ANSWER QUESTIONS
Q1. A patient is suffering from ADA deficiency. Can he be cured? How?
Answer: The first clinical gene therapy was given in 1990 to a 4-year old girl with adenosine deaminase (ADA) deficiency. This enzyme is crucial for the immune system to function. The disorder is caused due to the deletion of the gene for adenosine deaminase. In some children ADA deficiency can be cured by bone marrow transplantation; in others it can be treated by enzyme replacement therapy, in which functional ADA is given to the patient by injection. But the problem with both of these approaches that they are not completely curative. As a first step towards gene therapy, lymphocytes from the blood of the patient are grown in a culture outside the body. A functional ADA cDNA (using a retroviral vector) is then introduced into these lymphocytes, which are subsequently returned to the patient. However, as these cells are not immortal, the patient requires periodic infusion of such genetically engineered lymphocytes. However, if the gene isolate from marrow cells producing ADA is introduced into cells at early embryonic stages, it could be a permanent cure.
Q2. Define transgenic animals. Explain in detail any four areas where they can be utilised.
Answer: Transgenic animals are the products of genetic engineering and express specific gene(s) from totally unrelated source. Following are the four main areas where they can be utilised:
(1) To study normal physiology and development these animals can be used to study as to which factor/gene products are needed at what time of development. By expression of certain genes, they help scientists to understand the normal gene expression at various stages of growth and development. 4
(2) Study of Diseases: Transgenic animals can be created to serve as models for various human diseases. They also help us understand the involvement of various genes in diseases like cancer, Parkinson’s disease etc.
(3) Vaccine safety: Transgenic animals can be used to test vaccines like polio vaccine. Transgenic mice have shown promising results in this area and would replace the vaccine testing on monkeys in the years to come.
(4) Chemical safety testing: Transgenic animals are created which are more sensitive to certain chemicals/drugs. These are used to study the toxicity or side effects of that chemical/drug. The advantage is that we get results faster.
Q3. You have identified a useful gene in bacteria. Make a flow chart of the steps that you would follow to transfer this gene to a plant.
Answer: After identifying a useful gene in bacteria, following steps should be undertaken:
Q4. Highlight five areas where biotechnology has influenced our lives.
Answer: The applications of biotechnology include:
Q5. What are the various advantages of using genetically modified plants to increase the overall yield of the crop?
Answer: GM plants have been useful in many ways. Genetic modification has:
In addition to these uses, GM has been used to create tailor-made plants to supply alternative resources to industries, in the form of starches, fuels and pharmaceuticals.
Q6. Explain with the help of one example how genetically modified plants can:
(a) Reduce usage of chemical pesticides
(b) Enhance nutritional value of food crops
Answer: (a) Reduce usage of chemical pesticides: Bt toxin is produced by a bacterium called Bacillus thuringiensis (Bt for short). Bt toxin gene has been cloned from the bacteria and been expressed in plants to provide resistance to insects without the need for insecticides; in effect created a bio-pesticide. Examples are Bt cotton, Bt com, rice, tomato, potato and soyabean etc.
(b) Enhance nutritional value of food crops: Golden rice is the transgenic variety of basmati rice which gives high yield and rich in vitamin A, so it is used in the deficiency of vitamin-A causing night blindness and skin disorder.
Q7. List the disadvantages of insulin obtained from the pancreas of slaughtered cows and pigs:
Answer:
Q8. List the advantages of recombinant insulin.
Answer: Insulin used for diabetes was earlier extracted from pancreas of slaughtered cattle and pigs. Insulin from an animal source, though caused some patients to develop allergy or other types of reactions to the foreign protein. Insulin consists of two short polypeptide chains: chain A and chain B, that are linked together by disulphide bridges. In mammals, including humans, insulin is synthesised as a pro-hormone (like a pro-enzyme, the pro-hormone also needs to be processed before it becomes a fully mature and functional hormone) which contains an extra stretch called the C peptide. This C peptide is not present in the mature insulin and is removed during maturation into insulin. The main challenge for production of insulin using rDNA techniques was getting insulin assembled into a mature form. In 1983, Eli Lilly an American company prepared two DNA sequences corresponding to A and B, chains of human insulin and introduced them in plasmids of E. coli to produce insulin chains. Chains A and B were produced separately, extracted and combined by creating disulfide bonds to form human insulin.
Q9. What is meant by the term bio-pesticide? Name and explain the mode of action of a popular bio-pesticide.
Answer: Biopesticide is a pesticide which is
(a) not chemical in nature
(b) more specific in action against the pest
(c) safer for environment than chemical pesticides
A popularly known bio-pesticide is Bt toxin, which is produced by a bacterium called Bacillus thuringiensis. Bt toxin gene has been cloned from this bacterium and expressed in plants. Bt toxin protein when ingested by the insect, gets converted to its active form due to the alkaline pH of the gut. The activated toxin binds to the surface of midgut epithelial cells and create pores that cause cell swelling and lysis and eventually kills the insect.
Q10. Name the five key tools for accomplishing the tasks of recombinant DNA technology. Also mention the functions of each tool.
Answer:
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